DUF296 domain containing
Description
| Richardt et al. (2007): | This domain has been implicated in transcriptional regulation based on annotation of domain and/or family members. |
| PFAM: | This putative domain is found in proteins that contain AT-hook motifs PF02178 which strongly suggests a DNA-binding function for the proteins as a whole. |
References:
| 1) | Lang, D; Weiche, B; Timmerhaus, G; Richardt, S; Riano-Pachon, DM; Correa, LG; Reski, R; Mueller-Roeber, B; Rensing, SA. 2010. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol. 2: 488-503 PubMed |
| 2) | Richardt, S; Lang, D; Reski, R; Frank, W; Rensing, SA. 2007. PlanTAPDB, a Phylogeny-Based Resource of Plant Transcription-Associated Proteins. Plant Physiol. 143(4): 1452–1466 PubMed PubMed |
Summary
| Name: | DUF296 domain containing |
|---|---|
| Class: | PT |
| Number of species containing the TAP: | 108 |
| Number of available proteins: | 2938 |
The colour code corresponds to the rules for the domains:
should be contained
should not be contained
should not be contained
Domain rules:
(Domain names are clickable)
Phylogenetic tree for Archeaplastida:
No tree was calculated yet.
TAP distribution:
The following table shows the distribution of DUF296 domain containing over all species included in TAPscan. The values for e.g. a specific kingdom are shown in the tree below if you expand the tree for that kingdom.
| Minimum | Maximum | Average | Median | Standard deviation |
|---|---|---|---|---|
| 0 | 101 | 24.08 | 23 | 20.27 |